# Last edited on 2013-05-05 20:43:33 by stolfilocal

PROG := dm_show_alignments
PROGDIR := ../..

include ${STOLFIHOME}/programs/c/GENERIC-PROGS-TEST.make

all: clean run 
# all: clean run

DATA_DIR := ${STOLFIHOME}/programs/c/DNA/DATA

SEQ_A_TAG := DSIM
SEQ_A_FILE := ${DATA_DIR}/match/DSIM.bas

SEQ_B_TAG := DYAK
SEQ_B_FILE := ${DATA_DIR}/match/DYAK.bas

CANDS_FILE := ${DATA_DIR}/match/T-01/cands-in.cdv
CANDS_TAG := T-01

OUT_DIR := out
OUT_PREFIX := ${OUT_DIR}/${CANDS_TAG}

OUT_FILE := ${OUT_PREFIX}.alg

run: ${OUT_DIR} ${PROGDIR}/${PROG}
	${PROGDIR}/${PROG} \
          -cands ${CANDS_FILE} \
          -seqA ${SEQ_A_TAG} ${SEQ_A_FILE} \
          -seqB ${SEQ_B_TAG} ${SEQ_B_FILE} \
          > ${OUT_FILE}

${OUT_DIR}:
	mkdir -p ${OUT_DIR} 

clean:: 
	-/bin/rm -fv ${OUT_DIR}/*.alg